GgaEX6043771 @ galGal4
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6021674-6026005:-
Coord C1 exon
chr8:6025892-6026005
Coord A exon
chr8:6023418-6023561
Coord C2 exon
chr8:6021674-6022326
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTATTTATTGTGCAGGTG
3' ss Score
8.95
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGAATTCGACTATGAAAGAAAAACCTGGTGAGAGAAACAAAGAGAGAAAACCATCCAGACCAGTGCGGAAAGTTCAGAAACTGACACAGTCATCAAATCCAGAGTCCAAGCAAG
Seq A exon
GTGGAAACTATGTAATAAGTGCATCCTCCTGGCGGGAGGGACAAAAGCTAGTCAAAAAGCTACTGGGTCCAGCTCCCAAAATAGAGCACGACAGAAGAGCTGTATCTAGTGACAGAACAGGACGAGAGCGAACTGCTAAGTCTG
Seq C2 exon
GTCGTATTGGAAGGACAGGTTCAGATTCTAGACTGGTTGTTACACAGAAAACCTCTTCAAGAAGTTCTGAGAGGTCGAGGAGTAAAGTACGATCTGAGAATAATCTGAAGAAACTGGGATCTGCCCATCCAGGTGATAACCAAGATGATCATGCCTCTGTAAATAAGGACTTTCTGCCCTTGGAGATACGTGGAATTCTTGATGACTTGCAGTTGGATTCCATGAGTACAAAGCAGGAAAAAAATGTGGAAAAGCAGAATCAGAAGTCTGTTTTGCCTCCTCAAAATACCAGGAGCCACAGTCCAACCAAAAGGAAACCAGACAAGATAGCTGCTAGTGAGGAGCCTCAAGTGATCTCTAAGAAACGTCACTATGATACGGATGAGGTTCGTCAGTACATCATCAGGCAGCAAGAGGAGAGGAAGAAGAAACAGAATGAAGAGAAGAAAGCACAAAAAGAGGCAACGGAGCAGAAGAACAAAAGACTCCAAGAGCTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.898 C2=0.945
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCAGTGCGGAAAGTTCA
R:
TTCCACGTATCTCCAAGGGCA
Band lengths:
254-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]