GgaEX6043771 @ galGal3
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6341498-6345829:-
Coord C1 exon
chr8:6345716-6345829
Coord A exon
chr8:6343242-6343385
Coord C2 exon
chr8:6341498-6342153
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTATTTATTGTGCAGGTG
3' ss Score
8.95
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGAATTCGACTATGAAAGAAAAACCTGGTGAGAGAAACAAAGAGAGAAAACCATCCAGACCAGTGCGGAAAGTTCAGAAACTGACACAGTCATCAAATCCAGAGTCCAAGCAAG
Seq A exon
GTGGAAACTATGTAATAAGTGCATCCTCCTGGCGGGAGGGACAAAAGCTAGTCAAAAAGCTACTGGGTCCAGCTCCCAAAATAGAGCACGACAGAAGAGCTGTATCTAGTGACAGAACAGGACGAGAGCGAACTGCTAAGTCTG
Seq C2 exon
CAGGTCGTATTGGAAGGACAGGTTCAGATTCTAGACTGGTTGTTACACAGAAAACCTCTTCAAGAAGTTCTGAGAGGTCGAGGAGTAAAGTACGATCTGAGAATAATCTGAAGAAACTGGGATCTGCCCATCCAGGTGATAACCAAGATGATCATGCCTCTGTAAATAAGGACTTTCTGCCCTTGGAGATACGTGGAATTCTTGATGACTTGCAGTTGGATTCCATGAGTACAAAGCAGGAAAAAAATGTGGAAAAGCAGAATCAGAAGTCTGTTTTGCCTCCTCAAAATACCAGGAGCCACAGTCCAACCAAAAGGAAACCAGACAAGATAGCTGCTAGTGAGGAGCCTCAAGTGATCTCTAAGAAACGTCACTATGATACGGATGAGGTTCGTCAGTACATCATCAGGCAGCAAGAGGAGAGGAAGAAGAAACAGAATGAAGAGAAGAAAGCACAAAAAGAGGCAACGGAGCAGAAGAACAAAAGACTCCAAGAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'8-11,'8-10,9-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.898 C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCAGTGCGGAAAGTTCA
R:
TTCCACGTATCTCCAAGGGCA
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]