HsaEX6035236 @ hg19
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:179975589-179983640:+
Coord C1 exon
chr1:179975589-179975702
Coord A exon
chr1:179981064-179981210
Coord C2 exon
chr1:179982982-179983640
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGTGCCATGTATTTTTTTAGGTA
3' ss Score
8.25
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGATATTTCTATAAAGGAGAAACCTGCTGAAAAAAGTAAAGAGAAGAAAGTAGTCAAGCCAGTACGAAAAGTCCAAAAAGTAGCACAGTTATCAAGTACAGAATGCAGAACAG
Seq A exon
GTAGTAGTCATCTTATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCTCCCAGAATGGAGCCAAAAGAGCAAAGAACAGCATCAAGTGACAGAGGTGGAAGAGAAAGAACTGCTAAATCTG
Seq C2 exon
GGGGTCACATTGGAAGAGCAGAATCTGATCCCAGGTTGGACGTTTTACATAGACATCTTCAAAGAAACTCAGAACGTTCGAGAAGTAAATCTCGGTCTGAAAATAATATAAAGAAACTAGCTTCATCTCTTCCAGATAATAAGCAGGAGGAAAATACTGCCTTAAATAAGGACTTTTTACCTATTGAAATTCGTGGCATTCTTGATGACCTACAGCTGGATTCTACAGCTCACACTGCAAAGCAAGATACTGTAGAGTTACAGAACCAGAAGTCATCAGCACCAGTACATGCTCCTAGGAGTCACAGCCCAGTAAAAAGAAAACCTGACAAAATAACAGCTAATGAAGATCCCCCTGTTATTTCCAAAAGGCGCCACTATGACACAGATGAGGTACGACAGTACATTGTTAGGCAGCAGGAGGAAAGGAAGAGAAAGCAAAATGAAGAGAAGAAGGCTCAAAAGGAGGCTACAGAACAGAAAAACAAACGATTACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-'12-16,'12-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.875 C2=0.959
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAGTTATCAAGTACAGAATGCA
R:
AGGTCATCAAGAATGCCACGA
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)