BtaEX6070262 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000793 | LAMC2
Description
laminin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr16:65754394-65758743:+
Coord C1 exon
chr16:65754394-65754539
Coord A exon
chr16:65758082-65758238
Coord C2 exon
chr16:65758538-65758743
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTCGTGGTTTCAGATG
3' ss Score
10.5
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
CTTGCAACTGCAACCCAATGGGCTCGGAGCCCGTGGAGTGTAGAAGTGATGGCAGCTGTGTTTGCAAGCCAGGATTTGACGGCCTCAACTGTGACCATGCAGCATTAACCAACTGTCCAGCTTGCTATAATCAAGTGAAGAGTCAG
Seq A exon
ATGGATCAGTTTATGCAGCAACTTGAGAGCCTGGAGACACTGCTTTCGAAGGCTCAGGCTGGCGGAGGAGCAGTGCCTGACACAGAACTGGAGGGCAGGATGCAGCAGGCTGAACAGGCCCTGCAGGACCTTCTGAGAGAAGCCCAGATTTCAGAAG
Seq C2 exon
GTGCTATTAGATCCCTCAATCTCCAGTTGGCCAAGGCCAGGAGCCAAGAGAATAGCTACCAGACCCGCCTGGATGACCTCAAGATGACCGTGGAGAGACTTCGGACCCTGGGCAGCCAGCATCAGGACCGAGTTCAGGATACCCGCAGGCTCATCACACAGATGCGCCTGAGCCTGGAGGAGAGCGAGGCTGCCCTGCGGAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000793-'18-15,'18-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.453 C2=0.609
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(95.9=95.9)
A:
PF0005319=Laminin_EGF=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCAGCTGTGTTTGCAAG
R:
GGGTATCCTGAACTCGGTCCT
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]