MmuEX0026087 @ mm9
Exon Skipping
Gene
ENSMUSG00000026479 | Lamc2
Description
laminin, gamma 2 [Source:MGI Symbol;Acc:MGI:99913]
Coordinates
chr1:154983828-154987001:-
Coord C1 exon
chr1:154986856-154987001
Coord A exon
chr1:154984321-154984483
Coord C2 exon
chr1:154983828-154984033
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCTGTGTGCTTTCAGATG
3' ss Score
12.26
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTTGCAACTGCAGCCCCATGGGCTCGGAGCCTGGAGAGTGTCGAGGTGATGGCAGCTGTGTTTGCAAGCCAGGCTTTGGCGGCCTCAACTGTGATCACGCAGCCCTAACCAGTTGTCCTGCTTGCTACAATCAAGTGAAGATTCAG
Seq A exon
ATGGACCAGTTTACCCAGCAGCTCCAGAGCCTGGAGGCCCTGGTTTCAAAGGCTCAGGGTGGTGGTGGTGGTGGTACAGTCCCCAGTGGGGAGCTGGAAGGCAGGATGCAGCAGGCTGAGCAGGCCCTTCGAGACATTCTAAGAGAAGCTCAGATTTCAGAAG
Seq C2 exon
GGGCAATGAGAGCCCTTGGCTTCCGGCTGGCCAAGGCAAGGAGCCAAGAGAACGACTACAAGACCCGCCTGGATGACCTCAAGATGACTGCAGAAAGGATCCGGGCCCTGGGCAGTCAGCATCAGAACAGAGTTCAGGATACGAGCAGACTCATCTCTCAGATGCGCCTGAGTCTGGCAGGAAGCGAAGCTTCCCTGCAAAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026479-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.509 C2=0.536
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=89.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGAGTGTCGAGGTGAT
R:
GTTCTGATGCTGACTGCCCAG
Band lengths:
245-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: