RnoEX0049300 @ rn6
Exon Skipping
Gene
ENSRNOG00000002667 | Lamc2
Description
laminin subunit gamma 2 [Source:RGD Symbol;Acc:621053]
Coordinates
chr13:70581393-70584722:-
Coord C1 exon
chr13:70584574-70584722
Coord A exon
chr13:70581890-70582046
Coord C2 exon
chr13:70581393-70581598
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCTTTCCTGGGTGCTTTCAGATG
3' ss Score
9.14
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTTGCAACTGCAACCCTGTGGGCTCGGAGCCTGGAGAGTGTCGAAGTGATGGCAGCTGTGTTTGCAAGCCAGGCTTTGGAGGCCTCAACTGTGCGCACGCCGCCGCCCTAACCAGTTGCCCTGCTTGCTACAATCAAGTGAAGACTCAG
Seq A exon
ATGGACCAGTTTGCCCAGCAGCTCCAGAACTTGGAGGCCCTGGTTTCAAAGGCTCAGGGTGGTAATGGTGCAGTCCCCAGCGAGGAGCTGGAAGGCAGGATGCAGCAGGCTGAGCAGGCCCTTCGAGACATTCTGAGAGAAGCTCAGATTTCAGAAG
Seq C2 exon
GTGCTATGAGAGCCCTCAGCCTCCAGCTGGCCAAGGCAAGGAGCCAAGAGAACAACTACAAGAACCGCCTGGATGACCTCAAGATGACTGTGGAAAGGATTCGGGCCCTGGGCAGTCAGTATCAGAACCGAGTTCAGGATACAAGCAGACTCATCTCTCAGATGCGCCTGAGCCTGGCAGAAAGTGAAGCTTCCCTGCAAAACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002667-'21-15,'21-14,22-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.415 C2=0.246
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=92.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGTGTCGAAGTGATGGC
R:
TCTGATACTGACTGCCCAGGG
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]