GgaEX1032936 @ galGal4
Exon Skipping
Gene
ENSGALG00000004627 | LAMC2
Description
laminin, gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]
Coordinates
chr8:7512839-7514436:+
Coord C1 exon
chr8:7512839-7513072
Coord A exon
chr8:7513820-7513973
Coord C2 exon
chr8:7514231-7514436
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTCTATGGTTGCAGGTG
3' ss Score
8.69
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGCCCCGCTGTGAGTTCTGTGCCGACGGCTATTTTGGAGATCCTGCAGCCTCCCAGCCATGCCGGCCGTGCCAGTGCAACAGCAACGTGGAGCCCAACGCCGTGGGGAACTGCGATCGCCGGACAGGAGAGTGCCTCAAGTGCATCTACAACACGGCTGGCTTCCACTGCGAGCGCTGCAAGGATGGCTTCTTTGGGAACCCCCTGGCCCCCAACCCTGCTGACAAGTGCCGGG
Seq A exon
GTGGACCTGTACCTGCAGCAGTTGCAGGAGCTGGAGCTGCTTTCGTCAGAGGTGCAAGCTGGAGGCGGGGCTGTGGGCCAGGAGCTGGAAGGGAAGATGCAGCTGGCTGAGGAGACGCTGCAGGCCATCCTCAGAGAAGCCCTCAGCCTGCAAG
Seq C2 exon
CTTCCGACAGATCCCTAGAAAGCCGTGTGACCAGGCTGAAGGGACAAGGGTCCACCTGCCAGAGCCGTTTGGATGACGCCAAGGCAGCAGTGGAGAGGCTGATGTCTCTGGGCAGGCAGTACGAGAGGCAGGCGCAGGACGCCCGGCGGCTGCTGGAGACAGCCAGGCTGGACCTGAGCAACAGTGGAGCCTCTCTGAGTCGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004627_MULTIEX1-2/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.014
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(37.7=25.3),PF0005319=Laminin_EGF=WD(100=68.4)
A:
PF0005319=Laminin_EGF=PD(2.1=1.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGATGGCTTCTTTGGGA
R:
GACTCAGAGAGGCTCCACTGT
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]