GgaEX1032936 @ galGal3
Exon Skipping
Gene
ENSGALG00000004627 | LAMC2
Description
NA
Coordinates
chr8:7851333-7852238:+
Coord C1 exon
chr8:7851333-7851469
Coord A exon
chr8:7851622-7851775
Coord C2 exon
chr8:7852033-7852238
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGATCCTCTATGGTTGCAGGTG
3' ss Score
8.69
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
CCTGCAACTGCAACTCGGTGGGAGCTGAGCCCCTGATGTGCCGGAATGATGGGAGCTGCATCTGCAAGCCTGGCTTTGGGGGACCCAACTGCGAGCAGAGTGAGTGCCCAGCCTGCTACAGCCAAGTGAAAGCCCAG
Seq A exon
GTGGACCTGTACCTGCAGCAGTTGCAGGAGCTGGAGCTGCTTTCGTCAGAGGTGCAAGCTGGAGGCGGGGCTGTGGGCCAGGAGCTGGAAGGGAAGATGCAGCTGGCTGAGGAGACGCTGCAGGCCATCCTCAGAGAAGCCCTCAGCCTGCAAG
Seq C2 exon
CTTCCGACAGATCCCTAGAAAGCCGTGTGACCAGGCTGAAGGGACAAGGGTCCACCTGCCAGAGCCGTTTGGATGACGCCAAGGCAGCAGTGGAGAGGCTGATGTCTCTGGGCAGGCAGTACGAGAGGCAGGCGCAGGACGCCCGGCGGCTGCTGGAGACAGCCAGGCTGGACCTGAGCAACAGTGGAGCCTCTCTGAGTCGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004627-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.014
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(93.6=95.7)
A:
PF0005319=Laminin_EGF=PD(2.1=1.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCGAGCAGAGTGAGTG
R:
GACTCAGAGAGGCTCCACTGT
Band lengths:
253-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]