BtaEX6070311 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045582 | ARPC5
Description
actin related protein 2/3 complex, subunit 5, 16kDa [Source:HGNC Symbol;Acc:HGNC:708]
Coordinates
chr16:66150415-66157315:-
Coord C1 exon
chr16:66157243-66157315
Coord A exon
chr16:66154793-66154969
Coord C2 exon
chr16:66150415-66151808
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTATTTACCCTCAGGAT
3' ss Score
9.85
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGGAAACATGACAGCTGCCCTACAGGCAGCTCTGAAAAACCCCCCCATCAACACCAAGAGCCAGGCAGTGAAG
Seq A exon
GATCGCGCAGGCAGCATTGTCTTGAAGGTGCTCATCTCTTTTAAAGCTAACGATATTGAAAAGGCAGTTCAATCCCTGGACAAGAATGGTGTGGATCTCCTAATGAAGTATATTTATAAAGGCTTTGAGAGCCCCTCTGACAATAGCAGTGCTGTGTTATTGCAGTGGCATGAAAAG
Seq C2 exon
GCGCTTGCTGCTGGAGGAGTGGGGTCCATCGTTCGAGTCTTGACTGCAAGGAAAACCGTGTAGTCCGGTGGGAACTGGATTTCTCCCATGGGATGGGAGTTGCTGGTACCAAGACCAAAACAACCAAATGCCACCGCTGCCCCACGGGTAGCATCTGTTCCTCTCAGCTTTGCCTTCTTGCTTCCTTTCATATCTGTACAGAAGAAAATTACATACATATCAGTTTTCCCTAAATGAAAATTGGGATAAGATAAAAGAAATATTTCAACGAGAGTGTGTCATGGTCTCAGAATGATTTCAGTGATGTGGATACCAGTCTGTACATAGCATAATTTACACTCAGCTTCAATTGTGCAATTGTTCCCCTATTGGCTGGGTTTTCCTTTGTTTGTTGTTTGTTTTTTTGGGAGGGGTTTTTTGGCTTTGACTAATAGTGAGAAATTTGATCAGAATTGGAGGCCAGTTTCTTAACTCATTGCTAGCCAGGAAATGATCTATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045582-'1-5,'1-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=FE(16.8=100),PF093845=UTP15_C=FE(19.8=100)
A:
PF046999=P16-Arc=FE(40.6=100),PF093845=UTP15_C=FE(47.9=100)
C2:
PF046999=P16-Arc=PD(13.3=90.5),PF093845=UTP15_C=PD(0.8=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACATGACAGCTGCCCTA
R:
AGGAAGCAAGAAGGCAAAGCT
Band lengths:
258-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]