DreEX0014939 @ danRer10
Exon Skipping
Gene
ENSDARG00000039142 | arpc5a
Description
actin related protein 2/3 complex, subunit 5A [Source:ZFIN;Acc:ZDB-GENE-030131-8448]
Coordinates
chr2:21312157-21317615:+
Coord C1 exon
chr2:21312157-21312229
Coord A exon
chr2:21313224-21313400
Coord C2 exon
chr2:21314691-21317615
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGCGTTTGTGCAGGAT
3' ss Score
9.3
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGGTAACCTGATGGGAGCCCTGCAGGCAGTGCTGAAGAATCCACCCATCCACACCAAAAACCAGAATGTGAAG
Seq A exon
GATCGGGCTGAAGGTCTGGTGTTGAAAGTGCTCAGCTCTTTCAAGGCTAGCGATATAGAAAAGGCTGTTCAGTCTCTGGATAAGACTGGAGTAGATCTGCTCATGAAGTATATCTACAAGGGCTTCGAAAGACCCTCTGACAACAGCAGTGCCATTCTTCTTCAGTGGCATGAAAAG
Seq C2 exon
GCTTTGTCCGCAGGTGGCGTGGGCTCCATAGTCCGAGTCTTGACGGCCAGGAAGACGGTGTAACGTTCATTGGTAGGATTTGGCAGAGGGACTGGCTGGCACAAGCCCTCGTGGTCTGCTTTCTACCCACACTGCCAAACTGTGGAGGGTGTCCAGTCGCTCACTTTTTCTTAAAACGATCAAACATTTACAGTCCCATTTGGATGAGTTGCAGCAAAGATAAGCACCTTGGATCTATGCTATGCTAACAGAAAGGTGATGGGGGGGAGGGGATCTTTTTGTTGACCTCAGTATATATACTAAGCACAGACATTTGTCCAATTCACATACTTTATTCCCATGCTTGTAGAGTCTTTCAGTATAACAGAACAAACAGTATGTGTGATCACATGACTAAAGCGCTACACAGTCATGTTGTTACAACAGCATGTGATGGTGGTACTATAAAATTCTTGCTTTTTTTAAAGAATAGTTCAACCAAAAATGGCCATTCTGTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039142-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=FE(16.8=100),PF093845=UTP15_C=FE(19.7=100)
A:
PF046999=P16-Arc=FE(40.6=100),PF093845=UTP15_C=FE(47.5=100),PF040037=Utp12=PU(87.7=96.6)
C2:
PF046999=P16-Arc=PD(13.3=90.5),PF093845=UTP15_C=PD(1.6=9.5),PF040037=Utp12=PD(9.2=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCCACCCATCCACACCA
R:
GCTGCAACTCATCCAAATGGG
Band lengths:
253-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]