MmuEX0006241 @ mm9
Exon Skipping
Gene
ENSMUSG00000008475 | Arpc5
Description
actin related protein 2/3 complex, subunit 5 [Source:MGI Symbol;Acc:MGI:1915021]
Coordinates
chr1:154615991-154622727:+
Coord C1 exon
chr1:154615991-154616063
Coord A exon
chr1:154618494-154618670
Coord C2 exon
chr1:154621390-154622727
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTCCACATTTGCCCTCAGGAC
3' ss Score
9.02
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGGAAACATGACAGCTGCTCTCCAGGCTGCTCTGAAAAACCCCCCTATTAACACAAAGAGCCAGGCAGTGAAG
Seq A exon
GACCGTGCAGGCAGCATCGTCTTGAAGGTGCTTATCTCTTTTAAAGCTAATGATATTGAAAAGGCAGTGCAGTCTCTGGACAAGAACGGTGTGGACCTCCTAATGAAGTATATTTATAAAGGCTTTGAGAGCCCATCTGACAACAGCAGTGCTGTGTTGCTCCAGTGGCATGAAAAG
Seq C2 exon
GCCCTTGCTGCTGGAGGAGTGGGGTCCATTGTTCGAGTTTTGACTGCAAGGAAAACCGTGTAGTCCAGCTGGAACTGGACACCGTTCACAGAAGTGGGAGTTGCTGGTATAAAGACCAAAACAACCAAATGGCACCGCTGCCCTGTGGGTAGCATCTGTTTCTCTCAGCTTTGCCTTCTTGCTTCCTTTTTCATATCTGTAAAGAAGAAAATTACATATCAGTTTCCTTTAATGAAAATTGAAATAATGTGGAGAAAATTTTGTCTCAGTGGGGATGTTTGACCCTTTCATAACCATGTCAATAATATGTATCACATTCTGTAATTTATATTCAAGTTTGATTGTGCAATTTCTAACTCTGTTGCCTGGTTTAAGGGTTTTACTTTATTTTTAACCAATACTGAGAGATGTGATCAAAGTTGAGGCCAGTTTCCTAACTCATTGCTGGTCAGGAAGTGATCTTTATTTTTAAAAATGAGAGACTGGCAGCTATTAACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008475-'1-8,'1-5,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=FE(16.8=100),PF093845=UTP15_C=FE(19.8=100)
A:
PF046999=P16-Arc=FE(40.6=100),PF093845=UTP15_C=FE(47.9=100),PF040037=Utp12=PU(88.9=94.9)
C2:
PF046999=P16-Arc=PD(13.3=90.5),PF093845=UTP15_C=PD(0.8=4.8),PF040037=Utp12=PD(7.9=23.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGACAGCTGCTCTCCAG
R:
AGGAAGCAAGAAGGCAAAGCT
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: