DreEX0014941 @ danRer10
Exon Skipping
Gene
ENSDARG00000019062 | arpc5b
Description
actin related protein 2/3 complex, subunit 5B [Source:ZFIN;Acc:ZDB-GENE-040120-7]
Coordinates
chr20:34249859-34252716:+
Coord C1 exon
chr20:34249859-34249930
Coord A exon
chr20:34251084-34251260
Coord C2 exon
chr20:34251623-34252716
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCTGAATTGTGTTTTGTAGGAT
3' ss Score
8.95
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGGAACCTCATGGGTGCTCTACAGGCAGTATTAAAAAACCCACCAATCAATACAAAGAATCAAAACGTCAAG
Seq A exon
GATCGAGCTGAAGGTCTGGTGCTGAAGGTGCTCAGCTCCTTTAAGAGTACTGACATAGAGAAAGGAGTTCAGTCTCTGGATAAAAATGGAGTGGACCTGCTCATGAAATACATCTACAAGGGGTTTGAGCGGCCGTCTGAAAACAGCAGCGCCGTTCTACTGCAGTGGCATGAAAAG
Seq C2 exon
GCTCTTTCTGCGGGTGGAGTGGGCTGCATCGTGAGGGTCTTAACAGCCAGAAAAACTGTGTAAACTGTATGCGGTTTGCACAATGCACTCAAAACAAAAACCCAGCAGTGAAAAAACCCCTGCTGAGACACTCAGAACAAAGCGATGACTTTCCACAGGGTACTCAAGACGACCTCTCATATGATTTCGATGCGTTTTCTGTCATATCACTCTTCACTCACTGTCAAAAACTCATAATCATGCCATCGGTTGTATGTCATACTTACAGTAGCTTCTCTCAGGAACACTTTTCTATGCTATTATGTATTGCATTCAGCAATCTGAATACAGTGGACTGGTTAGAGTTTTATAAAAGCCTTGCTTAAGTTTATTATAACCTTTGATTACTACTACTAATTTACTTAGTGAGAAACGGCCATGTAACCTCAGTTATTTCATTCTGCATCATGTGTGAATGGCTTGAAATGAACAGCCACACAGGGTGGTGGGTTTAACTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019062_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(20.0=95.2)
A:
PF046999=P16-Arc=FE(40.6=100),PF040037=Utp12=PU(87.7=96.6)
C2:
PF046999=P16-Arc=PD(13.3=90.5),PF040037=Utp12=PD(9.2=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTGCTCTACAGGCAGTA
R:
TGAGAGGTCGTCTTGAGTACCC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]