HsaEX6035413 @ hg38
Exon Skipping
Gene
ENSG00000162704 | ARPC5
Description
actin related protein 2/3 complex subunit 5 [Source:HGNC Symbol;Acc:HGNC:708]
Coordinates
chr1:183620846-183633154:-
Coord C1 exon
chr1:183633082-183633154
Coord A exon
chr1:183630461-183630637
Coord C2 exon
chr1:183620846-183627594
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTTATTTATTGACCCACCAGGAC
3' ss Score
5.35
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGGAAACATGACAGCTGCCCTACAGGCAGCTCTGAAGAACCCCCCTATCAACACCAAGAGTCAGGCAGTGAAG
Seq A exon
GACCGGGCAGGCAGCATTGTCTTGAAGGTGCTCATCTCTTTTAAAGCTAATGATATAGAAAAGGCAGTTCAATCTCTGGACAAGAATGGTGTGGATCTCCTAATGAAGTATATTTATAAAGGATTTGAGAGCCCGTCTGACAATAGCAGTGCTATGTTACTGCAATGGCATGAAAAG
Seq C2 exon
GCACTTGCTGCTGGAGGAGTAGGGTCCATTGTTCGTGTCTTGACTGCAAGAAAAACTGTGTAGTCTGGCAGGAAGTGGATTATCTGCCTCGGGAGTGGGAATTGCTGGTACAAAGACCAAAACAACCAAATGCCACCGCTGCCCTGTGGGTAGCATCTGTTTCTCTCAGCTTTGCCTTCTTGCTTTTTCATATCTGTAAAGAAAAAAATTACATATCAGTTGTCCTTTAATGAAAATTGGGATAATATAGAAGAAATTGTGTTAAAATAGAAGTGTTTCATCCTTTCAAAACCATTTCAGTGATGTTTATACCAATCTGTATATAGTATAATTTACATTCAAGTTTAATTGTGCAACTTTTAACCCCTGTTGGCTGGTTTTTTGTTCTGTTTTGTTTTGTATTATTTTTAACTAATACTGAGAGATTTGGTCAGAATTTGAGGCCAGTTTCCTAGCTCATTGCTAGTCAGGAAATGATATTTATAAAAAATATGAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162704-'1-7,'1-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=FE(16.8=100),PF093845=UTP15_C=FE(19.7=100)
A:
PF046999=P16-Arc=FE(40.6=100),PF093845=UTP15_C=FE(47.5=100)
C2:
PF046999=P16-Arc=PD(13.3=90.5),PF093845=UTP15_C=PD(1.6=9.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACATGACAGCTGCCCTA
R:
AGCAAGAAGGCAAAGCTGAGA
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains