HsaEX6035413 @ hg19
Exon Skipping
Gene
ENSG00000162704 | ARPC5
Description
actin related protein 2/3 complex, subunit 5, 16kDa [Source:HGNC Symbol;Acc:708]
Coordinates
chr1:183592401-183602289:-
Coord C1 exon
chr1:183602217-183602289
Coord A exon
chr1:183599596-183599772
Coord C2 exon
chr1:183592401-183592606
Length
177 bp
Sequences
Splice sites
3' ss Seq
GTTATTTATTGACCCACCAGGAC
3' ss Score
5.35
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGGAAACATGACAGCTGCCCTACAGGCAGCTCTGAAGAACCCCCCTATCAACACCAAGAGTCAGGCAGTGAAG
Seq A exon
GACCGGGCAGGCAGCATTGTCTTGAAGGTGCTCATCTCTTTTAAAGCTAATGATATAGAAAAGGCAGTTCAATCTCTGGACAAGAATGGTGTGGATCTCCTAATGAAGTATATTTATAAAGGATTTGAGAGCCCGTCTGACAATAGCAGTGCTATGTTACTGCAATGGCATGAAAAG
Seq C2 exon
GTGCCTCTTGTATGATTCCAGATATGGAGGAGGCCCGGGAAGCCCACAGAGGTACAGCATGTCATCTGCCTCAAGGTGGTGCTACTTCACCACATTGATGATCCAACCACAAGCAACATGGGACACAGCATTCACTTTAACATTTCTATTTTCCTTTATCATTTCTGTTACTTGAGTGTGTAAGAGTAATCAACATAAATAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162704-'1-5,'1-3,2-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=FE(18.9=100),PF093845=UTP15_C=FE(20.0=100)
A:
PF046999=P16-Arc=FE(45.7=100),PF093845=UTP15_C=FE(48.3=100),PF040037=Utp12=PU(96.6=94.9)
C2:
PF046999=P16-Arc=PD(2.4=60.0),PF093845=UTP15_C=PD(0.1=0.0),PF040037=Utp12=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACAGGCAGCTCTGAAGA
R:
ACTCTTACACACTCAAGTAACAGA
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)