GgaEX1009214 @ galGal4
Exon Skipping
Gene
ENSGALG00000020927 | ARPC5
Description
Gallus gallus actin related protein 2/3 complex, subunit 5, 16kDa (ARPC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001031561]
Coordinates
chr8:7604691-7609670:-
Coord C1 exon
chr8:7609599-7609670
Coord A exon
chr8:7607565-7607741
Coord C2 exon
chr8:7604691-7605351
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTACCTACTGACAGGAT
3' ss Score
8.36
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGGAACATGATGGCCGCGCTGCAGGCGGCTCTGAAGAACCCACCCATCAACACGAAGAACCAAGCCGTGAAG
Seq A exon
GATCGTGCAGAAAGTATTGTCCTGAAGGTCCTCATCTCATTCAAAGCCAACGATATCGAGAAGGCAGTCCAGTCCCTGGATAAGAATGGTGTTGATCTGCTAATGAAGTACATCTACAAAGGCTTTGAGAGCCCCTCCGACAACAGCAGTGCTGTGTTACTGCAGTGGCATGAGAAG
Seq C2 exon
GCGCTGGCTGCTGGTGGAGTAGGGTCTATCGTCCGTGTTTTGACTGCCAGGAAGACGGTTTAACTCCAGCAACGAATGGCTGTTTGCTCTCCATGGTGTGGGAAATGCTGGTGCAGAACCCAACCAAATGCCATTGCTGCCCCGTGGGCAGCGCCTGTCTCTCAGCTTGCCTTCTCGCTGCTTCTTTCGTACCTGACAAGTAATGCATATCGTGATCTCTTTTTTGTTAAACTCTGGAAAATTATGAAGGTGCAATTTTATTTCTAACAGAACTATTTGGTACTCAAGCATTTCAGTGACACGCATAGCTACATTTACAACGTGTTTAGGATGATTTGTATTTGTGTATAATTATGGCAGATTTCGGCCTGACTTTCCACGCAAGTGCTGAGGGACGTAGGACAATGTCTTAATCCTTTTTGCTAGCCAAGCAGTGTTTTGATGTAAGATAAATATTTGAGAAGTGGGGCAGCTGCTAACATTGGTAACTGGACCATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020927-'0-4,'0-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF046999=P16-Arc=PU(22.3=95.8)
A:
PF046999=P16-Arc=FE(56.3=100),PF040037=Utp12=PU(89.1=96.6)
C2:
PF046999=P16-Arc=PD(18.4=90.5),PF040037=Utp12=PD(7.8=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGAAGAACCCACCCAT
R:
TCAGGTACGAAAGAAGCAGCG
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]