BtaEX6070434 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68604367-68605908:+
Coord C1 exon
chr16:68604367-68604528
Coord A exon
chr16:68605475-68605588
Coord C2 exon
chr16:68605706-68605908
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGCGTTATATTTGCCCACAGGTG
3' ss Score
11.32
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
TTCCTCCAAGTGTCATTGGTCCTAACCCTGAAAATCTCACTGTTGTGGTGAACAATTTCATCTCTTTGACCTGTGAGGTCTCTGGTTTTCCACCTCCTGATCTCAGCTGGCTCAAGAATGAACAGCCTATCAAACCAAACACAAATGCTCTCATTGTGCCTG
Seq A exon
GTGGTCGAACTTTGCAAATTATCCGGGCCAAGGTATCTGATGGTGGTGAATACACTTGTGTAGCTATCAACCAAGCTGGGGAAAGCAAGAAAAAAGTTTCCCTGACTGTTTATG
Seq C2 exon
TGCCCCCAAGCATTAAAGATCATGGAAGCGAATCTCTTTCTGTAGTTAATGTAAGAGAGGGGACCTCAGTATCACTGGAGTGTGGATCGAATGCTGTCCCGCCTCCAGTCATCACCTGGTATAAGAATGGACGGATGCTAACAGAGTCTGCTCGGCTGGAGATTTTGGCCGATGGACAAATGCTGCACATCACAAAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'63-71,'63-70,64-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(58.0=92.7)
A:
PF0767911=I-set=PD(40.9=92.3)
C2:
PF0767911=I-set=PU(68.6=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTCCTGATCTCAGCTG
R:
AGCATTTGTCCATCGGCCAAA
Band lengths:
258-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]