GgaEX0007088 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:331731-333397:+
Coord C1 exon
chr8_random:331731-331892
Coord A exon
chr8_random:332954-333067
Coord C2 exon
chr8_random:333195-333397
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACTTCTGCTTTTACTTCAGGTG
3' ss Score
9.22
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
TTCCTCCAAGTGTTGTTGGTGCTAATCCTGAGAATTTGACTGTCGTGGTGAATAATTTAATCTCTCTGACTTGTGAGGTCACTGGCTTTCCACCTCCTGATCTCAGCTGGCTCAAGAATGGAAAACCTGTCAGCTTGAATACTAACACTTTTATTGTGCCTG
Seq A exon
GTGCTCGGACTCTGCAGATTCCCCAAGCCAAACTGTCAGATGATGGTGAATATACTTGTATTGCAAGAAATCATGCTGGGGAAAGTCAGAAGAAGAGCTTCCTAACTGTCCTTG
Seq C2 exon
TCCCCCCAGGCATCAAAGACCATAGTGGAACCTCAGTGACAGTGTTCAACGTGAGAGTTGGCACCCCAGTGATGTTAGAGTGTAAAGCCAGTGCTATCCCACCACCGGTCATCACCTGGTACAAGAACAGGCGTATGATTTCAGAGTCTGCAAATGTGGAGATCTTAGCAGATGGGCAAACATTACAAATCAAGGGTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'69-85,'69-84,70-85
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(58.0=92.7)
A:
PF0767911=I-set=PD(40.9=92.3)
C2:
PF0767911=I-set=PU(68.2=85.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTCCTGATCTCAGCTG
R:
TGCCCATCTGCTAAGATCTCCA
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]