RnoEX6044631 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68006684-68008294:-
Coord C1 exon
chr13:68008133-68008294
Coord A exon
chr13:68006993-68007106
Coord C2 exon
chr13:68006684-68006886
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTACATTATATTTTCCCCAGGTG
3' ss Score
9.85
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTCCTCCAAGTGTCATTGGTCCTAACCATGAACATCTCTCTGTGGTTGTGAACCATTTCATCTCTTTGACCTGTGAAGTTTCTGGGTTCCCCCCTCCTGACCTCAACTGGCTCAAGAATGAACAGCCCATCAAGCCAAACACTAATGTTCTCATTGTGCCTG
Seq A exon
GTGGTCGAACTCTACAGATTATTCGGGCCAAGGTATCTGATGGCGGTGAATATACCTGCGTCGCTATCAACCAAGCCGGAGAAAGCAAGAAAAAGGTTTCCCTGACTGTTCATG
Seq C2 exon
TACCCCCAAGCATTAAGGATCACGGCAGCGAGTCTCTGTCTATAGTTAATGTAAGAGAGGGGACCTCGGTGTCATTGGAATGCGAGTCAAATGCTGTGCCCCCGCCAGTCATCACCTGGTCTAAGAATGGGCGGATGATACCGGATTCTAGCAACGTGGCGATTTTAACTGGTGGACAAATGCTACACATCAGGCGAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'71-72,'71-71,72-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.077 C2=0.176
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(58.0=92.7)
A:
PF0767911=I-set=PD(40.9=92.3)
C2:
PF0767911=I-set=PU(68.6=86.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAAGAATGAACAGCCCA
R:
GCTCGCCTGATGTGTAGCATT
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]