BtaEX6070435 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68596608-68604528:+
Coord C1 exon
chr16:68596608-68596795
Coord A exon
chr16:68598489-68598585
Coord C2 exon
chr16:68604367-68604528
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGCTTCATTTTTCCCTTTAGGTT
3' ss Score
12.4
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGCCACCAGTTATCAAGGGAGCAAATGGTGATCTCCCTGAAGAGGTCACCGTGCTGGTGAACAAGAGTGTGACGATGGAGTGTTCATCCAGTGGCAGTCCCACACCACGGAGTTCCTGGCAAAAAGATGGGCAGCCCTTGCTAGAAGATGAGCGTCATACATTTCTATCTAATGGGAGAATTCTTCAG
Seq A exon
GTTCTAAATAGTCAAATAACAGATATCGGCAGATATGTGTGCGTTGCTGAGAACACAGCTGGAAGTGCCAAAAAATATTTTAACTTCAATGTTCATG
Seq C2 exon
TTCCTCCAAGTGTCATTGGTCCTAACCCTGAAAATCTCACTGTTGTGGTGAACAATTTCATCTCTTTGACCTGTGAGGTCTCTGGTTTTCCACCTCCTGATCTCAGCTGGCTCAAGAATGAACAGCCTATCAAACCAAACACAAATGCTCTCATTGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'61-69,'61-68,62-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(62.4=84.1)
A:
PF0767911=I-set=PD(35.3=90.9)
C2:
PF0767911=I-set=PU(58.0=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTGCTAGAAGATGAGCG
R:
TTGAGCCAGCTGAGATCAGGA
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]