RnoEX6044629 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68008133-68016364:-
Coord C1 exon
chr13:68016177-68016364
Coord A exon
chr13:68014668-68014764
Coord C2 exon
chr13:68008133-68008294
Length
97 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCCATTTTCCTTTAGATT
3' ss Score
10.18
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGCCACCAGTTATCAAGGGAGCAAACAGTGATCTTCCGGAAGAGGTCACCGTGCTGGTGAACAAGAGTGCACAGATGGAATGTTCATCCAGCGGTAGCCCAGCACCAAGGAATTTCTGGCAAAAAGATGGACAGCCCTTGCTAGAAGATGAACATCACAAGTTCCTATCTGATGGCAGGGTTCTTCAG
Seq A exon
ATTCTAAATGCTCAAATAACAGATACCGGGAGGTATGTGTGTGTTGCTGAGAACACAGCTGGGAGTGCCAAGAAATACTTTAACCTCAACGTTCATG
Seq C2 exon
TTCCTCCAAGTGTCATTGGTCCTAACCATGAACATCTCTCTGTGGTTGTGAACCATTTCATCTCTTTGACCTGTGAAGTTTCTGGGTTCCCCCCTCCTGACCTCAACTGGCTCAAGAATGAACAGCCCATCAAGCCAAACACTAATGTTCTCATTGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'69-70,'69-69,70-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(62.8=85.7)
A:
PF0767911=I-set=PD(34.9=90.9)
C2:
PF0767911=I-set=PU(58.0=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAAAGATGGACAGCCCT
R:
AGCCAGTTGAGGTCAGGAGG
Band lengths:
183-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]