GgaEX6045307 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:328121-331892:+
Coord C1 exon
chr8_random:328121-328308
Coord A exon
chr8_random:328856-328952
Coord C2 exon
chr8_random:331731-331892
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTCTTTTTCTTAGATT
3' ss Score
10.08
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TACCACCATCGATCAGGGGAGCAGATGGTGATCTGCCTGAAGAAGTGAATGTACTTGGGAACAAGGTCGCAGTGATGGACTGTGTCACAAGCGGCAGTCCTTCTCCAAGCATCACCTGGGAGAAGGATGGCCATCTCCTAGCAGAAGACAACAAACATAGCTTTTTGTCCAATGGAAGAAGATTGCAG
Seq A exon
ATTTTGAATTCCCAAGTAACAGATACTGGCAGGTATGTCTGTGTTGTGGAAAACATAGCTGGAAGGGCCAAGAAGTATTTTAACTTGAATGTTCATG
Seq C2 exon
TTCCTCCAAGTGTTGTTGGTGCTAATCCTGAGAATTTGACTGTCGTGGTGAATAATTTAATCTCTCTGACTTGTGAGGTCACTGGCTTTCCACCTCCTGATCTCAGCTGGCTCAAGAATGGAAAACCTGTCAGCTTGAATACTAACACTTTTATTGTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'67-83,'67-82,68-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(62.4=84.1)
A:
PF0767911=I-set=PD(35.3=90.9)
C2:
PF0767911=I-set=PU(58.0=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGCCATCTCCTAGCAGA
R:
CAGCTGAGATCAGGAGGTGGA
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]