BtaEX6070480 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68340595-68395791:+
Coord C1 exon
chr16:68340595-68340717
Coord A exon
chr16:68391833-68392004
Coord C2 exon
chr16:68395685-68395791
Length
172 bp
Sequences
Splice sites
3' ss Seq
CATTTCTCTTTTTCTTGTAGGTT
3' ss Score
11.42
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTGGTATTTGTGCTTACTGGAGATTGTGATGACAGAAGCCATATTGGATACAGAGTCTATGAAGAAATTGCCTCTACAAGTTCTGGTCAAGTGTTCCATCTGGACAAAAAACAAGTTAATGAG
Seq A exon
GTTTTAAAATGGGTGGAAGAAGCAGTACAGGCTTCCAAAGTTCACCTCTTATCAACAGACCATTTGGAACAGGCTGAAAATACTTGGAAAATTCCCTTTGATCCCAGTCTAAAAGAGGTTACTGTGTCTCTGAGTGGCCCTTCTCCAATGATTGAAATTCACAATCCTTTAG
Seq C2 exon
GAAAGCTGATAAAAAAGGGATTTGGCCTGAATGAGCTATTAAATATTCATAACTCTGCCAAGGTGGTGAATGTTAAAGAGCCAGAGGCTGGAATATGGACAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTATTTGTGCTTACTGGAGA
R:
TCACTGTCCATATTCCAGCCTCT
Band lengths:
228-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]