MmuEX6028050 @ mm9
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:152664151-152706391:-
Coord C1 exon
chr1:152706269-152706391
Coord A exon
chr1:152666489-152666660
Coord C2 exon
chr1:152664151-152664257
Length
172 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTTTTCCTTCCATAGGTG
3' ss Score
12.98
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
GTGGTATTTGTGCTCACTGGAGACTGTGATGACAGGAATCATATTGGATATAAAGTCTATGAAGAAATTGCCTCTACAAGTTCTGGTCAAGTGTTCCATCTGGACAAAAAGCAAGTGAATGAG
Seq A exon
GTGTTGAAGTGGGTGGAAGAAGCTGTGCAGGCCTCCAAGGTTCACCTCTTATCCACCGATCATTTGGAGCACGCTGTGAATACTTGGAAAATTCCTTTTGATCCCAGCCTCAAAGAAGTTACTGTGTCCCTGAGTGGCCCGTCTCCCGTGATTGAGATTCGCAATCCTTTCG
Seq C2 exon
GGAAGCTGATAAAAAAGGGATTTGGCCTGAATGAGCTGTTAAATATCCATAACTCTGCCAAAGTGGTGAATGTCAAAGAGCCTGAAGCTGGCATGTGGACAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'5-4,'5-3,7-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(23.3=100)
A:
PF135191=VWA_2=PD(2.3=6.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTATTTGTGCTCACTGGAGAC
R:
CACTGTCCACATGCCAGCTTC
Band lengths:
226-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: