RnoEX6044591 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68186189-68229491:-
Coord C1 exon
chr13:68229369-68229491
Coord A exon
chr13:68188512-68188683
Coord C2 exon
chr13:68186189-68186295
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTTCCTTCCACAGGTG
3' ss Score
14.51
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GTGGTATTTGTGCTCACTGGAGACTGTGATGACAGGAACCATATTGGATACAAAGTCTATGAAGAAATTGCTTCTACAAGTTCTGGTCAAGTGTTCCATCTGGACAAAAAGCAAGTAAATGAG
Seq A exon
GTGTTGAAGTGGGTGGAAGAAGCGGTGCAGGCCTCCAAGGTTCACCTCTTATCCACCGACCATTTGGAACACGCTGTAAATACTTGGAAAATTCCTTTTGATCCCAGCCTCAAAGAAGTTACTGTGTCCCTGAGTGGCCCTTCTCCCGTGATTGAAATTCGCAATCCTTTCG
Seq C2 exon
GGAAGCTGATAAAAAAGGGGTTTGGCTTGAATGAGCTGTTAAATATCCATAACTCTGCCAAGGTGGTGAACGTCAAAGAGCCCGAAGCTGGAATGTGGACAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(23.3=100)
A:
PF135191=VWA_2=PD(2.3=6.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTATTTGTGCTCACTGGAGA
R:
ACTGTCCACATTCCAGCTTCG
Band lengths:
226-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]