BtaEX6070858 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000070 | F13B
Description
Bos taurus coagulation factor XIII, B polypeptide (F13B), mRNA. [Source:RefSeq mRNA;Acc:NM_001038529]
Coordinates
chr16:77852741-77855357:+
Coord C1 exon
chr16:77852741-77852926
Coord A exon
chr16:77854640-77854816
Coord C2 exon
chr16:77855181-77855357
Length
177 bp
Sequences
Splice sites
3' ss Seq
GACTTTAATTTTTTTTTTAGAAA
3' ss Score
8.43
5' ss Seq
CCAGTATGT
5' ss Score
5.8
Exon sequences
Seq C1 exon
AAAAGTGCCCTAAGCCTGACTTGAAGAATGGTTACATCTTTGATTCAAAATTATCTTACAAAATACAAGAGAACATGCGCTATCGTTGCACATCAGGATACAAAACCATGGCAGGGCAGGATGAAGAAGTGGTTCAATGCCTTGCTGATGGGTGGTCTCCCCAGCCAACCTGTAGCAAAGAACATG
Seq A exon
AAACATGTTTGGCCCCTGAATTGCATCATGGAAATTATTTCACAACACAGAAAACATTCAAAGTGAAGGAGAGAGTACGATACGAGTGTGCCTCTGGGTACCACACAGCTTCTGGGAAGAGCACAGAGGAGGCGGAGTGCCACCCGTACGGATGGGCCCTCACCCCACAATGTACCA
Seq C2 exon
AATTAAAATGCTCTTCTTTAAGAGTAATTGAAAATGGTTATTTTCATCCTGTAAAGCAAACCTATGAAGAAGGCGATGTAGTTCAGTTTTTCTGTCATAAAAATTATTATCTAAGTGGCTCTGACTTAATTCAGTGCTATAACTTTGGTTGGTACCCAGAATCTCCTGTCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000070-'7-6,'7-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAGGATGAAGAAGTGGT
R:
TCACAGACAGGAGATTCTGGGT
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]