RnoEX6044490 @ rn6
Exon Skipping
Gene
ENSRNOG00000012613 | F13b
Description
coagulation factor XIII B chain [Source:RGD Symbol;Acc:1311668]
Coordinates
chr13:56603518-56604968:+
Coord C1 exon
chr13:56603518-56603703
Coord A exon
chr13:56604284-56604460
Coord C2 exon
chr13:56604792-56604968
Length
177 bp
Sequences
Splice sites
3' ss Seq
TAACTGTTTAACTTTTTCAGAGA
3' ss Score
7.87
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
AAAAATGCCTGAAGCCTGTCTTAAGGAATGGCTATGTCTCTGATGGCAAAGTACTATACAAAATTCAAGAGAATATGCGTTACGGTTGCACTTCAGGATACAAAACGACTGGGGGAAAGGATGAAGAAGTGGTCCAGTGTCTTTCTGAAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAG
Seq A exon
AGACATGTTTGGCCCCTGAGTTGCATCATGGGAATTATTCCACGATACAGAGGACATTCAAAGTGAAGGACAGAGTGCAGTACACATGCACTGCAGGCTACTACACCGCCACAGGGAAGCAGACTGAGGAAGTGGAGTGCCAGGCTCATGGCTGGTCCTTCACGCCACAGTGCAACA
Seq C2 exon
AATTAATGTGCTCTTCTTTGAGATTAATAGAAAATGGCTATTTTCATCCTGTAAAGCAAACCTATGAAGAAGGAGATGTAGTTCAATTTTTCTGTCATGAAAATTATTACCTAAGTGGATCTGATTTAATTCAGTGCTATAACTTTGGCTGGTATCCAGAATCGCCCATATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012613-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
75%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTGGGGGAAAGGATGAA
R:
TCACATATGGGCGATTCTGGA
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]