HsaEX6035743 @ hg19
Exon Skipping
Gene
ENSG00000143278 | F13B
Description
coagulation factor XIII, B polypeptide [Source:HGNC Symbol;Acc:3534]
Coordinates
chr1:197029496-197031099:-
Coord C1 exon
chr1:197030914-197031099
Coord A exon
chr1:197030029-197030205
Coord C2 exon
chr1:197029496-197029672
Length
177 bp
Sequences
Splice sites
3' ss Seq
AATAATTTTTATAATTTTAGAAA
3' ss Score
6.33
5' ss Seq
CCAGTAGGT
5' ss Score
5.41
Exon sequences
Seq C1 exon
AAAAATGCACTAAGCCTGACCTGAGTAATGGTTACATCTCTGATGTAAAGTTATTGTATAAAATTCAAGAGAACATGCGTTATGGTTGCGCTTCAGGGTACAAAACCACTGGAGGGAAGGATGAAGAAGTGGTTCAATGTCTCTCTGATGGATGGTCTTCTCAACCAACCTGTAGGAAAGAACATG
Seq A exon
AAACATGTTTGGCTCCTGAATTATATAATGGAAATTATTCCACAACACAGAAAACATTCAAAGTGAAGGACAAAGTACAATACGAATGTGCTACTGGCTACTACACAGCTGGAGGAAAGAAGACAGAGGAGGTAGAATGTCTCACATACGGATGGTCTCTCACACCAAAATGTACCA
Seq C2 exon
AATTAAAGTGCTCTTCTTTAAGATTAATTGAAAATGGTTATTTTCATCCTGTAAAGCAAACCTATGAAGAAGGAGATGTCGTTCAGTTTTTCTGTCATGAAAATTATTATCTAAGTGGATCTGATTTAATTCAATGCTATAACTTTGGTTGGTACCCAGAATCTCCTGTATGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143278-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGGAGGGAAGGATGAA
R:
TCGCATACAGGAGATTCTGGGT
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)