MmuEX6027906 @ mm10
Exon Skipping
Gene
ENSMUSG00000026368 | F13b
Description
coagulation factor XIII, beta subunit [Source:MGI Symbol;Acc:MGI:88379]
Coordinates
chr1:139503761-139508265:+
Coord C1 exon
chr1:139503761-139503961
Coord A exon
chr1:139507573-139507749
Coord C2 exon
chr1:139508089-139508265
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGAATGTTTAACTTTTTCAGAGA
3' ss Score
7.35
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
AGAAACAGTGTGATTTTCCTACCGTGGAAAATGGAAGGATTGCCCAATATTATTATACGTTTAAAAGCTTTTACTTCCCCATGAGCGTAGACAAAAAACTATCATTCTTCTGTTTGGCTGGCTATGCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGCAGAAGGCTGGTCTCCAAACCCAAGGTGCTACA
Seq A exon
AGACATGTTTGGCCCCTGAGTTGGAACATGGAAATTACTCCACGACGCAGAGAACATTCAAAGTGAAGGACATAGTGGCTTACACATGCACTGCAGGCTACTACACCACTACAGGGAAGCAGACTGGGGAAGCAGAGTGCCAGGCTAATGGCTGGTCCCTCACACCACAGTGCAACA
Seq C2 exon
AATTAATGTGCTCTTCTTTGAGATTAATAGAAAATGGCTATTTTCATCCTGTAAAGCAAACATATGAAGAAGGAGATGTAGTTCAATTTTTCTGTCATGAAAATTATTATCTAAGTGGATCTGATTTAATTCAGTGCTATAACTTTGGCTGGTATCCAGAATCTCCCATATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026368_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.6)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTTGGCTGGCTATGCAA
R:
ACCAGCCAAAGTTATAGCACTGA
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types