HsaEX6035743 @ hg38
Exon Skipping
Gene
ENSG00000143278 | F13B
Description
coagulation factor XIII B chain [Source:HGNC Symbol;Acc:HGNC:3534]
Coordinates
chr1:197060366-197061969:-
Coord C1 exon
chr1:197061784-197061969
Coord A exon
chr1:197060899-197061075
Coord C2 exon
chr1:197060366-197060542
Length
177 bp
Sequences
Splice sites
3' ss Seq
AATAATTTTTATAATTTTAGAAA
3' ss Score
6.33
5' ss Seq
CCAGTAGGT
5' ss Score
5.41
Exon sequences
Seq C1 exon
AAAAATGCACTAAGCCTGACCTGAGTAATGGTTACATCTCTGATGTAAAGTTATTGTATAAAATTCAAGAGAACATGCGTTATGGTTGCGCTTCAGGGTACAAAACCACTGGAGGGAAGGATGAAGAAGTGGTTCAATGTCTCTCTGATGGATGGTCTTCTCAACCAACCTGTAGGAAAGAACATG
Seq A exon
AAACATGTTTGGCTCCTGAATTATATAATGGAAATTATTCCACAACACAGAAAACATTCAAAGTGAAGGACAAAGTACAATACGAATGTGCTACTGGCTACTACACAGCTGGAGGAAAGAAGACAGAGGAGGTAGAATGTCTCACATACGGATGGTCTCTCACACCAAAATGTACCA
Seq C2 exon
AATTAAAGTGCTCTTCTTTAAGATTAATTGAAAATGGTTATTTTCATCCTGTAAAGCAAACCTATGAAGAAGGAGATGTCGTTCAGTTTTTCTGTCATGAAAATTATTATCTAAGTGGATCTGATTTAATTCAATGCTATAACTTTGGTTGGTACCCAGAATCTCCTGTATGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143278-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGGAGGGAAGGATGAA
R:
TCGCATACAGGAGATTCTGGGT
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains