GgaEX6043505 @ galGal4
Exon Skipping
Gene
ENSGALG00000002369 | F13B
Description
coagulation factor XIII, B polypeptide [Source:HGNC Symbol;Acc:HGNC:3534]
Coordinates
chr8:2633438-2634517:+
Coord C1 exon
chr8:2633438-2633623
Coord A exon
chr8:2634046-2634222
Coord C2 exon
chr8:2634341-2634517
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCATATCTTATTCATTTAAGAGT
3' ss Score
3.62
5' ss Seq
CGAGTATGT
5' ss Score
6.61
Exon sequences
Seq C1 exon
AAAAATGTAATAAGCCTCTTCTGGAACATGGCGTGTTTTACGGTACAGAAATGTACTTCAACATACACGAGAAACTACAATACAAGTGTAACCAAGGGTACCACGCTCCCAGTGGCGGTACCGAAGATACGGTACAATGTCAGTCAGATGGATGGTCTTCCCAGGCAAGCTGTACTAAGACAGTGG
Seq A exon
AGTCATGTCAAGTACCTGAGTTACATCATGGCAACTACTTCACAACCCAGCGAGAGCTCCGAGTGAACGAAGCGCTGCTATACAAATGCGACGAAGGATACCGCACTGCAGGAGGAAATGCTACAGAAGAAGCAGTTTGTCTTGCGCATGGATGGTCCCTTACTCCAAACTGCTCGA
Seq C2 exon
AAAAAACTTGCCCCTCTTTGGGTGGAATAGAACATGGAGGTTTCTATCCTATGAAGAAATTCTATGAAGAAGGAGATGTAGTTCATTTTTTCTGCGAGGAAAATTATTCTTTCCGTGAATTTGACCTGATTCAATGTTATTACTTCGGATGGTATCCAGACCCTCCAGCCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002369-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.9)
A:
PF0008415=Sushi=WD(100=93.3)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCGGTACCGAAGATAC
R:
GCTGGAGGGTCTGGATACCAT
Band lengths:
246-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]