BtaEX6071353 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12656242-12720672:+
Coord C1 exon
chr17:12656242-12656296
Coord A exon
chr17:12674192-12674295
Coord C2 exon
chr17:12720535-12720672
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTCCCCCACCCCCAGCCC
3' ss Score
8.63
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGAAGGTGAGCAAAGAGCACACTCAGAAAGAAAACACCATCCGGACGACCACCAG
Seq A exon
CCCTTTCTTTTCAGAAGATACCTTTAGACAATCACCATTCACCTCCAATTCAAAAGACCTGCTGCCCAGTGAATCTGTGCTTCACGGAAGAATATCAGCTCCAG
Seq C2 exon
AAACAGAAAAGATAGTCCTCGAGGCAGGAAACGGGTTGCCCTCCTGGAAATTCAACGACCAGCTCTTCCCCTGTGACGTGTGTGGGAAAGTATTTGGGCGGCAGCAGACGCTGTCCCGACACCTGTCTCTGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-'9-12,'9-7,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.222 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=48.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGCACACTCAGAAAGA
R:
CTGTGTGCAGAGACAGGTGTC
Band lengths:
184-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]