GgaEX0014820 @ galGal4
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30670612-30694985:-
Coord C1 exon
chr4:30694928-30694985
Coord A exon
chr4:30690604-30690707
Coord C2 exon
chr4:30670612-30670749
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTATCTTATTTCCCCCACAGCCC
3' ss Score
10.72
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
AAAAGGTGAGCAAAGAGCACAATCACAATAAAGATAACACCATCAGAACTACAGTCAG
Seq A exon
CCCTTACTTTTCTGAGGACACCTTTAGACAATCACCGTTCACTTCCAACTCAAAAGATCTCCTGCCTAATGAAACTGCTCTTCATGGAAGGACATCTGCACCAG
Seq C2 exon
AAACAGAAAAGCTAGGGTTGGAAGCAGGAAACGGATTGCCATCGTGGAAATTTAATGACCAGCTCTTTCCCTGTGAAGTGTGTGGAAAAGTGTTTGGTCGACAGCAGACTTTGTCGCGACATCTCTCGCTGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'15-16,'15-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.583 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=48.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGAGCAAAGAGCACAATCA
R:
CTGTGTGCAGCGAGAGAT
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]