MmuEX6036580 @ mm10
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79120483-79175970:+
Coord C1 exon
chr8:79120483-79120540
Coord A exon
chr8:79136560-79136663
Coord C2 exon
chr8:79175833-79175970
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTCCCCTACCCCAGCCC
3' ss Score
6.97
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AAAAAGTGAGCAAAGAACACAATCACACGAAAGAAAACGCAATGCGGACAACCACCAG
Seq A exon
CCCTTTCTTTTCAGAAGACACATTTAGACAATCACCATTCACCTCCAATTCAAAAGATCTGCTGCCTGGTGAATCTGTGCTGCACGGAAGAGTGTCTGCTCCAG
Seq C2 exon
AGACCGAGAAGATTGTCCTTGAGGCAGGAAACGGACTGCCATCCTGGAAATTCAATGACCAGCTCTTCCCTTGCGATGTGTGTGGGAAAGTGTTCGGACGACAGCAGACATTGTCTCGACACCTCTCATTGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'23-20,'23-17,25-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.434 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=48.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTGAGCAAAGAACACAATCACA
R:
TGTGTGCAATGAGAGGTGTCG
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types