GgaEX0014820 @ galGal3
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32346729-32371102:-
Coord C1 exon
chr4:32371045-32371102
Coord A exon
chr4:32366721-32366824
Coord C2 exon
chr4:32346729-32346866
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTATCTTATTTCCCCCACAGCCC
3' ss Score
10.72
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
AAAAGGTGAGCAAAGAGCACAATCACAATAAAGATAACACCATCAGAACTACAGTCAG
Seq A exon
CCCTTACTTTTCTGAGGACACCTTTAGACAATCACCGTTCACTTCCAACTCAAAAGATCTCCTGCCTAATGAAACTGCTCTTCATGGAAGGACATCTGCACCAG
Seq C2 exon
AAACAGAAAAGCTAGGGTTGGAAGCAGGAAACGGATTGCCATCGTGGAAATTTAATGACCAGCTCTTTCCCTGTGAAGTGTGTGGAAAAGTGTTTGGTCGACAGCAGACTTTGTCGCGACATCTCTCGCTGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.583 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=48.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGAGCAAAGAGCACAATCA
R:
CTGTGTGCAGCGAGAGAT
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]