RnoEX0101722 @ rn6
Exon Skipping
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32414703-32470177:-
Coord C1 exon
chr19:32470120-32470177
Coord A exon
chr19:32450974-32451077
Coord C2 exon
chr19:32414703-32414840
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCTCCCTTACCCCAGCCC
3' ss Score
7.72
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAAAGTGAGCAAAGAACACAATCACACGAAAGAAAACACCATGCGGACGACCACCAG
Seq A exon
CCCTTTCTTTTCAGAAGATACATTTAGACAATCACCATTCACCTCCAATTCAAAAGATCTGCTGCCCGGTGAACCCGTGCTGCATGGGAGAGTCTCCGCTCCAG
Seq C2 exon
AGACAGATAAGATCGTCCTTGAGGCAGGAAACGGACTGCCGTCCTGGAAGTTCAGTGACCAGCTCTTCCCTTGTGACGTGTGTGGGAAGGTGTTCGGCCGACAGCAGACATTGTCTCGGCACCTCTCCTTGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697-'15-20,'15-15,17-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.556 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=48.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGAGCAAAGAACACAATCACA
R:
CTGTGTGCAAGGAGAGGTGC
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]