DreEX6032222 @ danRer10
Exon Skipping
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35306847-35321506:-
Coord C1 exon
chr1:35321452-35321506
Coord A exon
chr1:35321265-35321365
Coord C2 exon
chr1:35306847-35306984
Length
101 bp
Sequences
Splice sites
3' ss Seq
GGTAGCTTATGATTTTCCAGCCC
3' ss Score
3.55
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAAAGTAAGTAAAGCTAATGAAAACAAAGACAATGCATCATTCGGTATACACAG
Seq A exon
CCCTTTCCTTGATGACCGCTTTAGACAATCACCTTTCAGCACTCGCTCCAAGAGCTCTTCCCCAGCTGAAGCCGGATCTTCAAGCAGGGTTCCCCAGCAAG
Seq C2 exon
ATCCAGAGAAGGTGAGTAGTGAGCCAGGAAATGGACTTTCCCAATGGAGACTCAACGAACAGCTCTTTCCCTGCCCTGTGTGTGGCAAAGTGTTTGGTCGCCAACAGACTCTCTCCAGGCATCTCTCCTTACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.714 C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=48.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAATGAAAACAAAGACAATGCA
R:
GTGTGTAAGGAGAGATGCCTGG
Band lengths:
178-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]