BtaEX6071356 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12606088-12653830:+
Coord C1 exon
chr17:12606088-12606568
Coord A exon
chr17:12625475-12625708
Coord C2 exon
chr17:12653591-12653830
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTCTTCTTTTGACAGCTG
3' ss Score
10.49
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTTCATCAGCACCAGGACCGGGGAGAGACCTTTCAGTGCCAGCTCTGCCCTTTCACTTCCTCCCGCCACTTCAGCCTGAAGCTGCACATGCGTTGCCATCAGCACTTCCTGAGGACAGAAGCCAAGGTGAAGGAGGAGACCCCAGACCCCGAGGCCAAGGGGCCTCCCCACCTCAGTGACAGTGCCTGCCTGGGGCAGCAAAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCATGATGAAGTCCAGCACTCCAGAGAGGACTAGCCAGGGTGGGGCTGGCGTCTCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCAACCTCCTTTCCTCTGAATGCTACCGACAGGCCAGCCAACCACACAAAGCTGAGAGAGCCCTCCGAGTTCGCGGCCAACAGTGCGTCCGCGTTGTTCAGCCAGGACATCTCTGTTAAGATGGCGTCTGATTTTCTCATGAAGCTGTCAG
Seq A exon
CTGCAAATCAGAAGGAGCCCATGAATCTCAATTTTAAAATAAAAGAGGAGCCTAAGGAAGAGGAGACCCTAAGCGTCACATTGCCTCGGTCCAGCTATGTGTTCAGCCCCGAGTCTGAAGTGTCAGCCGCGAGCATCTCTGAGGACACGCTTAAGCCCCAGGAAGCAAAGGGCAACGTGCTAAGACGGGATATGTCAGTTAAAGCAGCATCGGAACTTCTCATGAAACTATCAG
Seq C2 exon
CGGAAAGCTACAAGGACACTCAGATGGTGAAGATTAAAGAGGAGCCTATGGAGGTTGACATCCAGGACTCGCAGGTCTCGATATCACCCAGCTGCAATGTTGGCTACAGCACTTTAATCGGGCGAGAGAAAACGGAACCCTTGCAGAAGCTGCCAGAAGGCAGAGTAGCCCCGGAGAGAAACCTCTTCAGTCAGGACATCTCCGTGAAGATGGCTTCCGAGCTGCTTTTTCAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=0.557 C2=0.395
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCAAGGAAGATAACGGC
R:
CTCGCCCGATTAAAGTGCTGT
Band lengths:
301-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]