MmuEX0053649 @ mm10
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:79076058-79118414:+
Coord C1 exon
chr8:79076058-79076538
Coord A exon
chr8:79091833-79092066
Coord C2 exon
chr8:79118175-79118414
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTATTCTTATTGTTTTTTAGCTG
3' ss Score
10.16
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GTTCATCAGCATCAGGACCGGGGAGAGACTTTTCAGTGCCAGCTGTGCCCTTTCACATCCTCACGCCACTTCAGCCTGAAACTGCACATGCGTTGCCATCAGCACTTCCTGAGGACAGAGGCCAAGGTGAAGGAGGAGATCCCAGACCCAGATGTCAAGGGATCTCCCCACCTCAGTGACAGTGGCTGCCTGGGGCAGCAGAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCGTGATGACGTCTAACACGCCAGAGAGGACTGGCCAGGGTGGGGCTGGCGTTGCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCCACCTCCTTTACCTTGAATGCTGCCGACAGGCCCGCCAACCACACAAAGCTGAAAGACCCCTCCGAGTATGTGTCCAACAGTGCAGCAGTATTGTTCAGCCAGGACATCTCGGTTAAGATGGCCTCCGATTTTCTCATGAAGCTGTCAG
Seq A exon
CTGCAAACCAGAAGGAGCCTATGAATCTTAATTTTAAAGTGAAGGAGGAGCCCAAGGAAGAGGAGTCCCTGAGCATGCCTTTGCCTCGCTCCAGCTACGTGTTCAGCCCGGAACCGGAAGTGTCTACCCCAAGCGTCTCCGAGGACCCACTTACACCCCAGGAAGGCAAGGGGAGTGTGTTAAGGCGGGACATGTCGGCCAAGGCTGCCTCAGAACTTCTCATGAAACTCTCAG
Seq C2 exon
CGGAAAGCTACAAGGAGACGCAGGCGGTGACGGTTAAAGAAGAACCCATGGAGGTGGACATCCAGGACTCCCCAGCCTCCATATCACCCAGCCGGAACATTGGCTACAGCACTTTAATGGGGCGAGAGAAAACTGAACCCTTACAGAAGCTGCCAGAAGGTCGAGTTCCCCCAGAGAGAAATCTCTTCAGCCAGGACATCTCTGTGAAGATGGCTTCTGAGCTGCTTTTTCAGCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'17-11,'17-8,19-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.772 C2=0.711
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000098614fB20024
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCAAGGAAGATAACGGC
R:
CTCGCCCCATTAAAGTGCTGT
Band lengths:
301-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types