RnoEX0101719 @ rn6
Exon Skipping
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32472217-32513389:-
Coord C1 exon
chr19:32512909-32513389
Coord A exon
chr19:32497327-32497560
Coord C2 exon
chr19:32472217-32472456
Length
234 bp
Sequences
Splice sites
3' ss Seq
TATTCTTATTTTTTTTTTAGCTG
3' ss Score
8.84
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GTTCATCAGCATCAGGACCGGGGAGAGACTTTTCAGTGCCAGCTGTGCCCTTTCACATCCTCACGCCACTTCAGCCTGAAACTACACATGCGCTGTCATCAGCACTTCCTGAGGACAGAGGCCAAGGTGAAGGAGGAGATCCTAGACCCAGATGTCAAGGGATCTCCCCACCTCAGTGACAGTGGCTGCCTGGGGCAGCAGAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCGTGATGACGTCTAACACGCCAGAGAGGACTGGCCAGGGTGGGGCTGGCGTTGCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCCACCTCCTTTACCCTGAATGCTGCCGACAGGTCCGCCAACCACACAAAGCCGAAAGACCCCTCCGAGTTTGTGCCCAACAGTGCGGCAGCATTGTTCAGCCAGGACATCTCGGTTAAGATGGCCTCCGATTTTCTCATGAAGCTGTCAG
Seq A exon
CTGCAAACCAGAAGGAGCCTATGAATCTTAATTTTAAAGTGAAGGAGGAGCCCAAGGAAGAGGAGACCCTAAGCATGCCTTTGCCTCGCTCCAGCTACGCGTTCAGCCCGGAACCGGAAGTGGCGACCCCTAGCATCTCCGAGGACCCACTTACACCCCAGGAAGGCAAGGGGAATGTGTTAAGGCGGGACATGTCAGCCAAGGCTGCCTCAGAACTTCTCATGAAACTCTCAG
Seq C2 exon
CGGAAAGTTACAAGGAGACGCAGGTCGTGACGGTTAAAGAAGAGCCCATGGAGGTGGATATCCAGGACTCCCCAGCCTCCATATCACCCAGCCGGAACGTTGGCTACAGCACTTTAATGGGGCGAGAAAAAACCGAACCCTTACAGAAGCTTCCGGAAGGTCGAGTTCCCCCAGAGAGAAATCTCTTCAGCCAGGACATCTCTGTGAAGATGGCTTCTGAGCTTCTTTTTCAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697-'10-13,'10-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.785 C2=0.728
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGACAGAGCTAGTGG
R:
CGACCTGCGTCTCCTTGTAAC
Band lengths:
300-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]