GgaEX1065633 @ galGal4
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30695672-30721165:-
Coord C1 exon
chr4:30720685-30721165
Coord A exon
chr4:30708557-30708790
Coord C2 exon
chr4:30695672-30695920
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCTTCTTCTGACAGCTG
3' ss Score
10.93
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTCATCAGCACCAGGACAGGGGTGAGACCTTTCAATGCCAGCTATGCCCTTTTACCTCCTCCCGCCACTTCAGCCTGAAACTCCATATGCGTTGCCATCAGCATTTCCTCAGGACAGAATCCAAAGTGAAGGAGGAAATACCAGAAACTGAGGTGAAGGGGTCACCACAGCTAAATAGTGACTCCTGCCCGGGACCACAGAGGGAAGGAGTTGGACCTGACCTTATGGGATCAGCATCTGTATCTAAAACATCTGATGTGGCTGGGCAGGCTAGTGGAGGTATTCCACCTTTACTAGTGAAAGAAGAGCCCAAAGATGACAATGGCATCTCAGCTGCACCTTTTGCTCTTAGCACTGTTGACAGAGCCCCCAACAACACAAAGCTGAAAGACTCTGACTTTGTGGCCAGTACAGCATCAGCACTATTCAGCCAAGACATCTCTGTCAAGATGGCATCAGATTTTCTTATGAAGCTGTCAG
Seq A exon
CTGCAAATCAAAAAGAGCCCTTGACTCCAAAGTTTAAAGTGAAAGATGAGCCTAAGGATGAAGAAGCTGCAAGTTCAACCTTGCCTCAGTCCAGCTATGTGTTCAACCAGGAATCCGAAGCCTCAGCTCCCAGTGCACCTAAGGAGAAACTCAAGCCACAGGAAGCACAGGCAAATATGATGAGGCAGGACATATCAGTCAAGGCAGCGTCTGAGCTCCTCATGAAGCTCTCAG
Seq C2 exon
CTGAGAGTTACAAGGAAACCCAGACCGTAAAGATAAAAGAAGAACCAATGGAAGTTGACATTCATGATTCTCAGACTTCGGTGTCACCCAGCCAACCCAGCCAAAATGTTGGCTACAGCACTTTATTAGGGCGAGACATTAGTGAACACATCCAGAAGGCACCAGAAGGTCGTGTGCTCCCAGAACGAAATCTGTTCAGCCAGGATATATCAGTGAAGATGGCATCTGAGCTGCTCTTCCAGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'9-11,'9-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.584 A=0.759 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAACAACACAAAGCTGA
R:
ATTTCGTTCTGGGAGCACACG
Band lengths:
305-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]