DreEX0088316 @ danRer10
Exon Skipping
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35325098-35373273:-
Coord C1 exon
chr1:35372775-35373273
Coord A exon
chr1:35346375-35346602
Coord C2 exon
chr1:35325098-35325337
Length
228 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTCTTGCCCCACAGCAG
3' ss Score
9.87
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GTCCATCAGCACCAAGACCGAGGGGAGACGTTCCAGTGTGAGCTCTGCCCCTTCACATCCTCCCGCCACTTTAGCCTCAAGCTGCACATGCGTTGCCATCAGCACTTCCCTCGTCCCGACCTCAAAGTCAAAGAAGAACCCGGCACAGACACCGAGGAGGGCGAGGGCTTGCTCATGGGGGACGGTGGAGCGGCTGGTGATCAGGCCATGAACACAGATGCTTCTACGTCTCCCACTGTGAGCCAACCCGACGCTCGTTTGCTGGCCTCTCCTGCAGAACCCTCAAACCACGTCCAGATCAAGGAGGAACCACAGGAGAGGGATGTGTCTGTGATGTCTCCCTTTGCCCTGTGTAGGGAGAGGCCGAGCAGCAGCAGCAGTTCTCTGGATCTGTCCGGGCTTAAATCTAGTCCACCGGGGCCCGGGCCTACAGCTGCTTCACTCTTCAGCCCAGATATCACCACCAAGACGGCTACAGACCTCCTCATAAAGCTCTCGG
Seq A exon
CAGCGAACCAGAAGGAGGCCCTAAAGGGTCCATACTGTGTCAAGGAAGAGCCCCAGGCGGAGGAGCCCCTGAACTCTCAGAGGGGACCCAGCTACAGCTTCTGCCAAGAAGGACCTCCAGGAGCCACCAAACCAAGAGAGGAGGGGAGCCCGATGTTGGGCAAGAGCAGCCTTCTCAGCCAGGACATCAACGTCAAAGTGGCCTCTGAATTGCTTATGAAGCTCTCAG
Seq C2 exon
AGAACAACAAAGACGCTTGCGTCCAGAATGTTATTGTGAAGGCGGAGCCTATGGAAGTGGATCCACCCCTTGATCTGGCCTCACCCTCCTCCCATCTACTGGGCTTTAGCACTTCAGGACCATGTGAAAAGAAGGAACCAATGGTCAACCTCCCAGATCATTTGCCCCGCCCCCAGAATGACCTCTTCTCGCAGGACATATCGGTCAAAATGGCCTCCGAGCTGCTTTTCAAACTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-'7-6,'7-4,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=0.662 C2=0.580
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(72.4=12.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGATGTCTCCCTTTGCCC
R:
GGTCCTGAAGTGCTAAAGCCC
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]