GgaEX1065633 @ galGal3
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
NA
Coordinates
chr4:32371789-32397282:-
Coord C1 exon
chr4:32396802-32397282
Coord A exon
chr4:32384674-32384907
Coord C2 exon
chr4:32371789-32372037
Length
234 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCTTCTTCTGACAGCTG
3' ss Score
10.93
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTCATCAGCACCAGGACAGGGGTGAGACCTTTCAATGCCAGCTATGCCCTTTTACCTCCTCCCGCCACTTCAGCCTGAAACTCCATATGCGTTGCCATCAGCATTTCCTCAGGACAGAATCCAAAGTGAAGGAGGAAATACCAGAAACTGAGGTGAAGGGGTCACCACAGCTAAATAGTGACTCCTGCCCGGGACCACAGAGGGAAGGAGTTGGACCTGACCTTATGGGATCAGCATCTGTATCTAAAACATCTGATGTGGCTGGGCAGGCTAGTGGAGGTATTCCACCTTTACTAGTGAAAGAAGAGCCCAAAGATGACAATGGCATCTCAGCTGCACCTTTTGCTCTTAGCACTGTTGACAGAGCCCCCAACAACACAAAGCTGAAAGACTCTGACTTTGTGGCCAGTACAGCATCAGCACTATTCAGCCAAGACATCTCTGTCAAGATGGCATCAGATTTTCTTATGAAGCTGTCAG
Seq A exon
CTGCAAATCAAAAAGAGCCCTTGACTCCAAAGTTTAAAGTGAAAGATGAGCCTAAGGATGAAGAAGCTGCAAGTTCAACCTTGCCTCAGTCCAGCTATGTGTTCAACCAGGAATCCGAAGCCTCAGCTCCCAGTGCACCTAAGGAGAAACTCAAGCCACAGGAAGCACAGGCAAATATGATGAGGCAGGACATATCAGTCAAGGCAGCGTCTGAGCTCCTCATGAAGCTCTCAG
Seq C2 exon
CTGAGAGTTACAAGGAAACCCAGACCGTAAAGATAAAAGAAGAACCAATGGAAGTTGACATTCATGATTCTCAGACTTCGGTGTCACCCAGCCAACCCAGCCAAAATGTTGGCTACAGCACTTTATTAGGGCGAGACATTAGTGAACACATCCAGAAGGCACCAGAAGGTCGTGTGCTCCCAGAACGAAATCTGTTCAGCCAGGATATATCAGTGAAGATGGCATCTGAGCTGCTCTTCCAGTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.584 A=0.759 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAACAACACAAAGCTGA
R:
ATTTCGTTCTGGGAGCACACG
Band lengths:
305-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]