BtaEX6072224 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54118189-54119750:-
Coord C1 exon
chr17:54119592-54119750
Coord A exon
chr17:54119002-54119137
Coord C2 exon
chr17:54118189-54118311
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCCGGTTGCCACAGGTA
3' ss Score
9.48
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GCTTGGGCTGGTGACAAAGCTGTATATCCTGAACCCCAAGGCTATGAGTGTTATAGAGCTGTATGGCATCCTGGATCCCACCACCCGAGACTGGACTGATGGGGTGCTGTCCAACATCTTCCGGGAGATCAACAAGCCCACGGATAAGAAGGAGCGGAA
Seq A exon
GTATATTTTATTCGATGGTGATGTGGATGCTTTGTGGGTGGAGAACATGAATTCTGTGATGGATGACAACAAGCTGTTGACCCTGGCCAATGGCGAGCGCATTCGGCTTCAAGCACACTGTGCCCTGCTCTTCGAG
Seq C2 exon
GTTGGGGATTTACAGTATGCCTCCCCTGCGACTGTGTCTCGATGCGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCAACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'40-43,'40-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(38.4=100)
A:
PF077289=AAA_5=FE(32.6=100)
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGTGACAAAGCTGTAT
R:
TCCAGTATGGTTGATATTTCAAGTTT
Band lengths:
249-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]