DreEX6011120 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27741766-27743343:+
Coord C1 exon
chr5:27741766-27741924
Coord A exon
chr5:27743007-27743142
Coord C2 exon
chr5:27743221-27743343
Length
136 bp
Sequences
Splice sites
3' ss Seq
ACTTTGATTTGACTTCACAGGTA
3' ss Score
9.29
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
GTTGGGACTGCTGACCAAATTGTACAGCCTGAACCCTAAAGCAATGAGTGTCATTGAGCTATATGGGATCCTGGATCCGGTCACCCGAGACTGGACTGATGGAATATTATCGAACATATTTCGTGACATCAATAAACCCACCGATAAAAAAGAAAGAAG
Seq A exon
GTACATCCTGTTTGATGGGGATGTGGATGCTCTTTGGGTGGAGAACATGAATTCAGTTATGGATGATAACAAGCTTCTTACACTGGCTAATGGAGAAAGAATTCGTCTCCAGAGTCACTGTGCTCTGCTCTTTGAG
Seq C2 exon
GTTGGAGATTTGCAATACGCCTCTCCGGCTACTGTCTCTCGCTGTGGAATGGTGTTTGTGGACCCTAAAAACCTTCGCTATGCTCCCTACTGGGAAAAATGGGTCAACAGCAGAGCCCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'44-41,'44-40,45-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(46.0=96.3)
A:
PF077289=AAA_5=FE(32.6=100)
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTGAACCCTAAAGCAA
R:
GGCTCTGCTGTTGACCCATTT
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]