GgaEX0004145 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4928995-4929856:-
Coord C1 exon
chr15:4929698-4929856
Coord A exon
chr15:4929234-4929369
Coord C2 exon
chr15:4928995-4929117
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTGGCTCCTGTATCCACAGGTA
3' ss Score
10.24
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCTGGGATTATTGACAAAGCTTTACACACTGAATCCTAAAGCTATGTCTGTGATTGAACTATATGGGATCCTTGACCCTACCACACGAGACTGGACAGATGGAGTCCTGTCAAACATTTTTCGGGAGATCAACAGGCCTACTGACAAGAAAGAGCGAAG
Seq A exon
GTACATTCTGTTTGATGGAGACGTAGATGCTCTCTGGGTTGAAAACATGAATTCTGTCATGGATGACAATAAGTTATTGACCTTGGCAAATGGGGAGAGGATTAGACTTCAGTCACACTGTGCACTGTTGTTTGAG
Seq C2 exon
GTTGGTGACTTACAGTATGCATCTCCTGCCACAGTATCCCGCTGTGGAATGGTCTTTGTGGATCCTAAAAATCTAAAATATAAGCCTTACTGGCAGAAGTGGACACAAGGAAGAGAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE8
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(38.4=100)
A:
PF077289=AAA_5=FE(32.6=100)
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAAGCTTTACACACTGAATCC
R:
CCTTGTGTCCACTTCTGCCAG
Band lengths:
258-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]