MmuEX6021069 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125267687-125272159:+
Coord C1 exon
chr5:125267687-125267845
Coord A exon
chr5:125270132-125270267
Coord C2 exon
chr5:125272037-125272159
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATGCTCCTTGGTCCCTGCAGGTA
3' ss Score
10.26
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GCTTGGGATAATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATTGAGCTGTATGGCATCCTGGATCCCACCACTCGAGACTGGACAGATGGGGTGCTGTCGAACATCTTCCGGGAGATCAACAGGCCGACCGACAAGAAGGAACGGAA
Seq A exon
GTATATTTTGTTCGATGGTGACGTGGATGCCTTGTGGGTGGAAAACATGAACTCCGTGATGGACGACAACAAACTGTTGACCTTGGCCAACGGGGAGCGCATCCGGCTCCAGGCGCACTGCGCCCTGCTCTTTGAG
Seq C2 exon
GTTGGAGACCTGCAATACGCCTCCCCGGCTACTGTGTCTCGATGTGGGATGGTCTATGTGGACCCTAAGAACCTGAAATACCAACCATACTGGAAGAAATGGCTACAACAGATACAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'38-40,'38-39,39-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(38.4=100)
A:
PF077289=AAA_5=FE(32.6=100)
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCCTGAACCCCAAAGCC
R:
AGCCATTTCTTCCAGTATGGTTGG
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: