HsaEX6069950 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123861012-123866073:+
Coord C1 exon
chr12:123861012-123861170
Coord A exon
chr12:123864595-123864730
Coord C2 exon
chr12:123865951-123866073
Length
136 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTTGGTTGCTGCAGGTA
3' ss Score
9.59
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GCTTGGGCTGACGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGACCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAA
Seq A exon
GTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAG
Seq C2 exon
GTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'53-53,'53-52,55-53=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(38.4=100)
A:
PF077289=AAA_5=FE(32.6=100)
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGGCTGACGACAAAGTT
R:
TCCAGTATGGTCGATATTTCAAGT
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains