BtaEX6072229 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54101878-54109771:-
Coord C1 exon
chr17:54109626-54109771
Coord A exon
chr17:54103543-54103695
Coord C2 exon
chr17:54101878-54102138
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATTATCTCTTTCTGTTTCAGATT
3' ss Score
13.13
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTCATACAGTGGATACAACCCGTACTACCTGGACACTGGAGCAAATGGTAAAGATTAGGCAACCTGTTCTTTTGGTTGGTGAATCTGGTACCTCCAAGACAGCCACTACCCACAACTTCCTGAAAAACCTGAATGAAGAGACTAAT
Seq A exon
ATTGTGTTAATGGTCAGTTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCCAATGTGGAAAAACGAACCAAAGACACTTATGGCCCACCCATGGGAAAACGCCTCCTGGTGTTCATGGATGACATGAACATGCCGAAG
Seq C2 exon
GTGGATGAATATGGCACACAGCAGCCAATTGCCCTGCTGAAACTGCTCTTGGAAAAAGGCTTCTTGTATGACCGGGGGAAGGAGCTGAACTGTAAAAGCATCCGTGACCTCGGCTTTATTGCTGCGATGGGGAAAGCTGGAGGAGGCCGCAACGAAGTCGATCCAAGATTTACTTCGCTCTTCAGTGTCTTCAACATTCCCTTTCCTTCCGAGGAGTCTTTGCACTTAATTTATTCCTCTATCCTCAAAGGCCACACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'46-50,'46-49,47-50=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.9=100)
A:
PF127752=AAA_7=FE(18.7=100)
C2:
PF127752=AAA_7=FE(32.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGTACTACCTGGACACTG
R:
AGCAATAAAGCCGAGGTCACG
Band lengths:
252-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]