MmuEX6021063 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124797906-124801057:+
Coord C1 exon
chr5:124797906-124798051
Coord A exon
chr5:124798890-124799042
Coord C2 exon
chr5:124800797-124801057
Length
153 bp
Sequences
Splice sites
3' ss Seq
CACCCTCTGCTCTGTGACAGATT
3' ss Score
9.11
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCACACAGTGGATACCACCCGCACCACCTGGATCCTGGAGCAGATGGTTAAAATCAAGCACCCTGTTCTTTTTGTGGGTGAATCCGGCACTTCTAAGACAGCCACTACCCAGAACTTCCTCAAAAACCTGAACGAGGAGACCAAT
Seq A exon
ATTGTTCTGATAGTCAACTTCTCCTCTCGGACCACATCCCTGGACATCCAGAGAAATCTGGAAGCCAATGTGGAGAAGCGGACTAAGGACACGTATGGGCCGCCCATGGGGAAGCGCCTGCTGGTGTTCATGGATGACATGAACATGCCAAAG
Seq C2 exon
GTGGATGAGTATGGTACCCAGCAGCCCATCGCTTTGCTGAAGCTGTTGCTAGAAAAGGGCTACTTATATGACCGTGGGAAAGAACTCAACTGTAAGAGTATCCGTGATCTGGGCTTCATCGCTGCTATGGGGAAGGCAGGAGGGGGCCGCAACGAGGTGGACCCCAGATTCCTCTCACTGTTCAGCGTCTTCAATGTCCCTTTCCCATCGGAGGAGTCCCTGAACTTGATCTACTACTCCATTCTGAAGGGTCACACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'52-63,'52-53,54-63=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.8=100)
A:
PF127752=AAA_7=FE(18.6=100)
C2:
PF127752=AAA_7=FE(32.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTGGGTGAATCCGGCA
R:
TGAGAGGAATCTGGGGTCCAC
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types