GgaEX0004149 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4924876-4926454:-
Coord C1 exon
chr15:4926309-4926454
Coord A exon
chr15:4925759-4925911
Coord C2 exon
chr15:4924876-4925136
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTATTTCGTCCCCTTTGCAGCTT
3' ss Score
9.86
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
TGCCTACAGTGGATACAACACGCACTACTTGGTTGCTAGAACAGATGGTAAAAATAAAACGCCCAGTTGTTCTTGTAGGTGAATCCGGTACCTCTAAAACAGCAACGACGCAAAACTTCTTAAACAGTCTGAATGAAGACCTTTAT
Seq A exon
CTTCTCCTAGTGATTAACTTCTCTTCCCGTACAACATCAATGGACATTCAGAGAAATCTAGAGACAAATGTAGAGAAACGATCTAAAGACGCTTATGGCCCTCCTATGGGAAAGCGTCTCATTATTTTCATGGATGATCTGAATATGCCGAGG
Seq C2 exon
GTTGATGAGTATGGCACACAGCAACCCATTGCCTTGTTGAAGTTGCTACTAGAAAAAGGTTTCTTATATGACCGCAGTAAGGAGATGAACTGTAAAATGCTCCGAGATCTGGGTTTTGTTGCTGCCATGGGGAAAGCTGGAGGAGGTCGGAATGAAGTCGACCCTCGATTCATCTCACTCTTCAGTGTTTTTAACATACCTTTTCCTTCTGAGCAATCACTGAATTTGATCTACGCCTCCATCCTGAAAGGCCACACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'43-44,'43-43,44-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(17.6=100)
A:
PF127752=AAA_7=FE(18.4=100)
C2:
PF127752=AAA_7=FE(31.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACGCACTACTTGGTTGCT
R:
TGGCAGCAACAAAACCCAGAT
Band lengths:
257-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]